Journal of Biological Chemistry on 2009-05-07 03:32 PM

Protein-protein docking dealing with the unknown [electronic resource].

Moreira, Irina S.; Ramos, Maria J.; Fernandes, Pedro A.

Journal of computational chemistry; 01/30/2010
(AN IND44301915)
Agricola

Using Gaussian model to improve biological sequence comparison [electronic resource].

Dai, Qi; Han, Bin; Zhu, Lei; Yao, Yuhua; Liu, Xiaoqing; Li, Lihua

Journal of computational chemistry; 01/30/2010
(AN IND44301917)
Agricola

The subspace iteration method in protein normal mode analysis [electronic resource].

Sedeh, Reza Sharifi; Bathe, Klaus-J©ơrgen; Bathe, Mark

Journal of computational chemistry; 01/15/2010
(AN IND44296921)
Agricola

The Box H/ACA Ribonucleoprotein Complex: Interplay of RNA and Protein Structures in Post-transcriptional RNA Modification.

Hamma, Tomoko; Ferr©♭-D'Amar©♭, Adrian R.

Journal of biological chemistry; 01/08/2010
(AN IND44306656)
Agricola

Hypoxic Repression of Endothelial Nitric-oxide Synthase Transcription Is Coupled with Eviction of Promoter Histones.

Journal of biological chemistry; 01/08/2010
(AN IND44306657)
Agricola

Threonine-insensitive Homoserine Dehydrogenase from Soybean: GENOMIC ORGANIZATION, KINETIC MECHANISM, AND IN VIVO ACTIVITY.

Journal of biological chemistry; 01/08/2010
(AN IND44306658)
Agricola

N Terminus Is Key to the Dominant Negative Suppression of CaV2 Calcium Channels: IMPLICATIONS FOR EPISODIC ATAXIA TYPE 2.

Journal of biological chemistry; 01/08/2010
(AN IND44306659)
Agricola

Ethanol Enhances Hepatitis C Virus Replication through Lipid Metabolism and Elevated NADH/NADâð.

Seronello, Scott; Choi, Jinah; Wakita, Takaji; Ito, Chieri

Journal of biological chemistry; 01/08/2010
(AN IND44306660)
Agricola

Amino Acid Signaling in Yeast: Post-genome Duplication Divergence of the Stp1 and Stp2 Transcription Factors.

Wielemans, Kevin; Andr©♭, Bruno; Vissers, St©♭phan; Jean, Cathy

Journal of biological chemistry; 01/08/2010
(AN IND44306661)
Agricola

Isolation of Novel Animal Cell Lines Defective in Glycerolipid Biosynthesis Reveals Mutations in Glucose-6-phosphate Isomerase.

Journal of biological chemistry; 01/08/2010
(AN IND44306662)
Agricola

Leishmania UDP-sugar Pyrophosphorylase: THE MISSING LINK IN GALACTOSE SALVAGE?

Journal of biological chemistry; 01/08/2010
(AN IND44306663)
Agricola

Protein Kinase CÎø Modulates Ligand-induced Cell Surface Death Receptor Accumulation: A MECHANISTIC BASIS FOR ENZASTAURIN-DEATH LIGAND SYNERGY.

Journal of biological chemistry; 01/08/2010
(AN IND44306664)
Agricola

c-Jun Regulates Phosphoinositide-dependent Kinase 1 Transcription: IMPLICATION FOR Akt AND PROTEIN KINASE C ACTIVITIES AND MELANOMA TUMORIGENESIS.

Journal of biological chemistry; 01/08/2010
(AN IND44306665)
Agricola

Self-association of Calcium-binding Protein S100A4 and Metastasis.

Journal of biological chemistry; 01/08/2010
(AN IND44306666)
Agricola

Ca℗øâð/Calmodulin-dependent Protein Kinase II Binds to and Phosphorylates a Specific SAP97 Splice Variant to Disrupt Association with AKAP79/150 and Modulate Îł-Amino-3-hydroxy-5-methyl-4-isoxazolepropionic Acid-type Glutamate Receptor (AMPAR) Activity.

Journal of biological chemistry; 01/08/2010
(AN IND44306667)
Agricola

Estrogen Stimulates Degradation of Îø-Amyloid Peptide by Up-regulating Neprilysin.

Journal of biological chemistry; 01/08/2010
(AN IND44306668)
Agricola

Characterization of the East Asian Variant of Aldehyde Dehydrogenase-2: BIOACTIVATION OF NITROGLYCERIN AND EFFECTS OF Alda-1.

Journal of biological chemistry; 01/08/2010
(AN IND44306669)
Agricola

Antigen Binding to Secretory Immunoglobulin A Results in Decreased Sensitivity to Intestinal Proteases and Increased Binding to Cellular Fc Receptors.

Duc, M©♭lanie; Corth©♭sy, Blaise; Johansen, Finn-Eirik

Journal of biological chemistry; 01/08/2010
(AN IND44306670)
Agricola

The Cytosolic J-protein, Jjj1, and Rei1 Function in the Removal of the Pre-60 S Subunit Factor Arx1.

Meyer, Alison E.; Craig, Elizabeth A.; Hoover, Lindsey A.

Journal of biological chemistry; 01/08/2010
(AN IND44306671)
Agricola

Ubiquitin-specific Peptidase 21 Inhibits Tumor Necrosis Factor Îł-induced Nuclear Factor ÎðB Activation via Binding to and Deubiquitinating Receptor-interacting Protein 1.

Journal of biological chemistry; 01/08/2010
(AN IND44306672)
Agricola

DNA Structure Specificity Conferred on a Replicative Helicase by Its Loader.

Gupta, Milind K.; McGlynn, Peter; Atkinson, John

Journal of biological chemistry; 01/08/2010
(AN IND44306673)
Agricola

Rpe65 Isomerase Associates with Membranes through an Electrostatic Interaction with Acidic Phospholipid Headgroups.

Journal of biological chemistry; 01/08/2010
(AN IND44306674)
Agricola

Structural Insights into Vinyl Reduction Regiospecificity of Phycocyanobilin:Ferredoxin Oxidoreductase (PcyA).

Journal of biological chemistry; 01/08/2010
(AN IND44306600)
Agricola

Dietary Docosahexaenoic Acid Supplementation Modulates Hippocampal Development in the Pemt⁻/⁻ Mouse.

Journal of biological chemistry; 01/08/2010
(AN IND44306601)
Agricola

Involvement of the Calcium-sensing Receptor in Human Taste Perception.

Journal of biological chemistry; 01/08/2010
(AN IND44306602)
Agricola

Three-dimensional Model of Human Platelet Integrin ÎłIIbÎø3 in Solution Obtained by Small Angle Neutron Scattering.

Journal of biological chemistry; 01/08/2010
(AN IND44306603)
Agricola

Heterodimerization of ORL1 and Opioid Receptors and Its Consequences for N-type Calcium Channel Regulation.

Journal of biological chemistry; 01/08/2010
(AN IND44306604)
Agricola

C-reactive Protein Exists in an NaCl Concentration-dependent Pentamer-Decamer Equilibrium in Physiological Buffer.

Journal of biological chemistry; 01/08/2010
(AN IND44306605)
Agricola

Complement Factor H Binds at Two Independent Sites to C-reactive Protein in Acute Phase Concentrations.

Journal of biological chemistry; 01/08/2010
(AN IND44306606)
Agricola

Inherent Anti-amyloidogenic Activity of Human Immunoglobulin Îđ Heavy Chains.

Journal of biological chemistry; 01/08/2010
(AN IND44306607)
Agricola

Activation of Calcitonin Receptor and Calcitonin Receptor-like Receptor by Membrane-anchored Ligands.

Chang, Chia Lin; Hsu, Sheau Yu Teddy; Park, Jae-Il

Journal of biological chemistry; 01/08/2010
(AN IND44306608)
Agricola

Role for X-linked Inhibitor of Apoptosis Protein Upstream of Mitochondrial Permeabilization.

Journal of biological chemistry; 01/08/2010
(AN IND44306609)
Agricola

Unique Impact of RB Loss on Hepatic Proliferation: TUMORIGENIC STRESSES UNCOVER DISTINCT PATHWAYS OF CELL CYCLE CONTROL.

Journal of biological chemistry; 01/08/2010
(AN IND44306610)
Agricola

MRE11-RAD50-NBS1 Complex Dictates DNA Repair Independent of H2AX.

Yuan, Jingsong; Chen, Junjie

Journal of biological chemistry; 01/08/2010
(AN IND44306611)
Agricola

Binding to DNA Protects Neisseria meningitidis Fumarate and Nitrate Reductase Regulator (FNR) from Oxygen.

Journal of biological chemistry; 01/08/2010
(AN IND44306612)
Agricola

The Human UGT1A3 Enzyme Conjugates Norursodeoxycholic Acid into a C₂₃-ester Glucuronide in the Liver.

Journal of biological chemistry; 01/08/2010
(AN IND44306613)
Agricola

Proline Is Not Uniquely Capable of Providing the Pivot Point for Domain Swapping in 2G12, a Broadly Neutralizing Antibody against HIV-1.

Journal of biological chemistry; 01/08/2010
(AN IND44306614)
Agricola

18Îø-Glycyrrhetinic Acid Ameliorates Acute Propionibacterium acnes-induced Liver Injury through Inhibition of Macrophage Inflammatory Protein-1Îł.

Journal of biological chemistry; 01/08/2010
(AN IND44306615)
Agricola

Functional Analysis of an Arabidopsis thaliana Abiotic Stress-inducible Facilitated Diffusion Transporter for Monosaccharides.

Journal of biological chemistry; 01/08/2010
(AN IND44306616)
Agricola

Enzymatic Activity Is Required for the in Vivo Functions of CARM1.

Journal of biological chemistry; 01/08/2010
(AN IND44306617)
Agricola

Decreased Superoxide Production in Macrophages of Long-lived p66Shc Knock-out Mice.

Journal of biological chemistry; 01/08/2010
(AN IND44306618)
Agricola

Characterization of an Endoplasmic Reticulum-associated Silaffin Kinase from the Diatom Thalassiosira pseudonana.

Sheppard, Vonda; Kr©œger, Nils; Poulsen, Nicole

Journal of biological chemistry; 01/08/2010
(AN IND44306619)
Agricola

Conditional Disruption of Pkd1 in Osteoblasts Results in Osteopenia Due to Direct Impairment of Bone Formation.

Journal of biological chemistry; 01/08/2010
(AN IND44306620)
Agricola

Functional Consequences of Homocysteinylation of the Elastic Fiber Proteins Fibrillin-1 and Tropoelastin.

Journal of biological chemistry; 01/08/2010
(AN IND44306621)
Agricola

The Adenomatous Polyposis Coli-associated Guanine Nucleotide Exchange Factor Asef Is Involved in Angiogenesis.

Journal of biological chemistry; 01/08/2010
(AN IND44306622)
Agricola

Isoform-specific O-Glycosylation of Osteopontin and Bone Sialoprotein by Polypeptide N-Acetylgalactosaminyltransferase-1.

Miwa, Hazuki E.; Tabak, Lawrence A.; Jamison, Oliver; Gerken, Thomas A.

Journal of biological chemistry; 01/08/2010
(AN IND44306623)
Agricola

REH2 RNA Helicase in Kinetoplastid Mitochondria: RIBONUCLEOPROTEIN COMPLEXES AND ESSENTIAL MOTIFS FOR UNWINDING AND GUIDE RNA (gRNA) BINDING.

Journal of biological chemistry; 01/08/2010
(AN IND44306624)
Agricola

The Recognition Unit of FIBCD1 Organizes into a Noncovalently Linked Tetrameric Structure and Uses a Hydrophobic Funnel (S1) for Acetyl Group Recognition.

Journal of biological chemistry; 01/08/2010
(AN IND44306625)
Agricola

X-ray Crystallographic Analysis of the 6-Aminohexanoate Cyclic Dimer Hydrolase: CATALYTIC MECHANISM AND EVOLUTION OF AN ENZYME RESPONSIBLE FOR NYLON-6 BYPRODUCT DEGRADATION.

Journal of biological chemistry; 01/08/2010
(AN IND44306626)
Agricola

The Notch Effector Hey1 Associates with Myogenic Target Genes to Repress Myogenesis.

Buas, Matthew F.; Kadesch, Tom; Kabak, Shara

Journal of biological chemistry; 01/08/2010
(AN IND44306627)
Agricola

Dynamic and Selective Nucleosome Repositioning during Endotoxin Tolerance.

El Gazzar, Mohamed; McCall, Charles E.; Yoza, Barbara K.; Liu, Tiefu

Journal of biological chemistry; 01/08/2010
(AN IND44306628)
Agricola

Interaction of Double-stranded RNA-dependent Protein Kinase (PKR) with the Death Receptor Signaling Pathway in Amyloid Îø (AÎø)-treated Cells and in APPSLPS1 Knock-in Mice.

Journal of biological chemistry; 01/08/2010
(AN IND44306629)
Agricola

Ionizing Radiation Induces Cellular Senescence of Articular Chondrocytes via Negative Regulation of SIRT1 by p38 Kinase.

Journal of biological chemistry; 01/08/2010
(AN IND44306630)
Agricola

Integration of a Phosphatase Cascade with the Mitogen-activated Protein Kinase Pathway Provides for a Novel Signal Processing Function.

Journal of biological chemistry; 01/08/2010
(AN IND44306631)
Agricola

Novel Nuclear Nesprin-2 Variants Tether Active Extracellular Signal-regulated MAPK1 and MAPK2 at Promyelocytic Leukemia Protein Nuclear Bodies and Act to Regulate Smooth Muscle Cell Proliferation.

Journal of biological chemistry; 01/08/2010
(AN IND44306632)
Agricola

p53 Binding to Nucleosomal DNA Depends on the Rotational Positioning of DNA Response Element.

Journal of biological chemistry; 01/08/2010
(AN IND44306633)
Agricola

FM19G11, a New Hypoxia-inducible Factor (HIF) Modulator, Affects Stem Cell Differentiation Status.

Journal of biological chemistry; 01/08/2010
(AN IND44306634)
Agricola

Kidins220/ARMS Modulates the Activity of Microtubule-regulating Proteins and Controls Neuronal Polarity and Development.

Journal of biological chemistry; 01/08/2010
(AN IND44306635)
Agricola

Cannabinoid 1 Receptor and Interleukin-6 Receptor Together Induce Integration of Protein Kinase and Transcription Factor Signaling to Trigger Neurite Outgrowth.

Zorina, Yana; Bromberg, Kenneth D.; Iyengar, Ravi

Journal of biological chemistry; 01/08/2010
(AN IND44306636)
Agricola

Biochemical Isolation and Characterization of the Tubulovesicular LC3-positive Autophagosomal Compartment.

Journal of biological chemistry; 01/08/2010
(AN IND44306637)
Agricola

Bax Contains Two Functional Mitochondrial Targeting Sequences and Translocates to Mitochondria in a Conformational Change- and Homo-oligomerization-driven Process.

Journal of biological chemistry; 01/08/2010
(AN IND44306638)
Agricola

Genomic Targets of the KRAB and SCAN Domain-containing Zinc Finger Protein 263.

Frietze, Seth; Farnham, Peggy J.; Jin, Victor X.; Lan, Xun

Journal of biological chemistry; 01/08/2010
(AN IND44306639)
Agricola

Co-chaperone CHIP Stabilizes Aggregate-prone Malin, a Ubiquitin Ligase Mutated in Lafora Disease.

Rao, Sudheendra N.R.; Jana, Nihar Ranjan; Maity, Ranjan; Sharma, Jaiprakash

Journal of biological chemistry; 01/08/2010
(AN IND44306640)
Agricola

Ku and DNA-dependent Protein Kinase Dynamic Conformations and Assembly Regulate DNA Binding and the Initial Non-homologous End Joining Complex.

Journal of biological chemistry; 01/08/2010
(AN IND44306641)
Agricola

Differential Interaction of the E3 Ligase Parkin with the Proteasomal Subunit S5a and the Endocytic Protein Eps15.

Safadi, Susan S.; Shaw, Gary S.

Journal of biological chemistry; 01/08/2010
(AN IND44306642)
Agricola

Structure of the N-terminal Regulatory Domain of a Plant NADPH Oxidase and Its Functional Implications.

Journal of biological chemistry; 01/08/2010
(AN IND44306643)
Agricola

Catalytic Mechanism of Bleomycin N-Acetyltransferase Proposed on the Basis of Its Crystal Structure.

Journal of biological chemistry; 01/08/2010
(AN IND44306644)
Agricola

In Vivo Stoichiometry of Shelterin Components.

Journal of biological chemistry; 01/08/2010
(AN IND44306645)
Agricola

Entrapment and Structure of an Extrahelical Guanine Attempting to Enter the Active Site of a Bacterial DNA Glycosylase, MutM.

Qi, Yan; Karplus, Martin; Verdine, Gregory L.; Spong, Marie C.; Nam, Kwangho

Journal of biological chemistry; 01/08/2010
(AN IND44306646)
Agricola

MicroRNA-7 Modulates CD98 Expression during Intestinal Epithelial Cell Differentiation.

Journal of biological chemistry; 01/08/2010
(AN IND44306647)
Agricola

Each Monomer of the Dimeric Accessory Protein for Human Mitochondrial DNA Polymerase Has a Distinct Role in Conferring Processivity.

Journal of biological chemistry; 01/08/2010
(AN IND44306648)
Agricola

Revised Role of Glycosaminoglycans in TAT Protein Transduction Domain-mediated Cellular Transduction.

Gump, Jacob M.; Dowdy, Steven F.; June, Ronald K.

Journal of biological chemistry; 01/08/2010
(AN IND44306649)
Agricola

Dimeric Coiled-coil Structure of Saccharomyces cerevisiae Atg16 and Its Functional Significance in Autophagy.

Journal of biological chemistry; 01/08/2010
(AN IND44306650)
Agricola

The Vacuole Import and Degradation Pathway Utilizes Early Steps of Endocytosis and Actin Polymerization to Deliver Cargo Proteins to the Vacuole for Degradation.

Brown, C. Randell; Chiang, Hui-Ling; Dunton, Danielle

Journal of biological chemistry; 01/08/2010
(AN IND44306651)
Agricola

Chromosome 21-derived MicroRNAs Provide an Etiological Basis for Aberrant Protein Expression in Human Down Syndrome Brains.

Journal of biological chemistry; 01/08/2010
(AN IND44306652)
Agricola

Large T Antigen Promotes JC Virus Replication in G₂-arrested Cells by Inducing ATM- and ATR-mediated G₂ Checkpoint Signaling.

Journal of biological chemistry; 01/08/2010
(AN IND44306653)
Agricola

Distinct Roles for Rho Versus Rac/Cdc42 GTPases Downstream of Vav2 in Regulating Mammary Epithelial Acinar Architecture.

Journal of biological chemistry; 01/08/2010
(AN IND44306654)
Agricola

Mode of Binding of the Tuberculosis Prodrug Isoniazid to Heme Peroxidases: BINDING STUDIES AND CRYSTAL STRUCTURE OF BOVINE LACTOPEROXIDASE WITH ISONIAZID AT 2.7 ©… RESOLUTION.

Journal of biological chemistry; 01/08/2010
(AN IND44306655)
Agricola

From the Ribosome to the Spliceosome and Back Again.

Guthrie, Christine

Journal of biological chemistry; 01/01/2010
(AN IND44303255)
Agricola

Structural Models for Interactions between the 20S Proteasome and Its PAN/19S Activators.

Journal of biological chemistry; 01/01/2010
(AN IND44303259)
Agricola

ASXL1 Represses Retinoic Acid Receptor-mediated Transcription through Associating with HP1 and LSD1.

Journal of biological chemistry; 01/01/2010
(AN IND44303266)
Agricola

Oscillatory Flow-induced Proliferation of Osteoblast-like Cells Is Mediated by ÎłvÎø₃ and Îø₁ Integrins through Synergistic Interactions of Focal Adhesion Kinase and Shc with Phosphatidylinositol 3-Kinase and the Akt/mTOR/p70S6K Pathway.

Journal of biological chemistry; 01/01/2010
(AN IND44303279)
Agricola

Roscovitine Binds to Novel L-channel (CaV1.2) Sites That Separately Affect Activation and Inactivation.

Journal of biological chemistry; 01/01/2010
(AN IND44303293)
Agricola

Serine-Threonine Kinase Receptor-associated Protein Inhibits Apoptosis Signal-regulating Kinase 1 Function through Direct Interaction.

Jung, Haiyoung; Ha, Hyunjung; Manoharan, Ravi; Seong, Hyun -A.

Journal of biological chemistry; 01/01/2010
(AN IND44303305)
Agricola

Differential Effects of Caldesmon on the Intermediate Conformational States of Polymerizing Actin.

Huang, Renjian; Wang, Chih-Lueh Albert; Grabarek, Zenon

Journal of biological chemistry; 01/01/2010
(AN IND44303322)
Agricola

Regulation of mTOR Complex 1 (mTORC1) by Raptor Serâıâœ℗đ and Multisite Phosphorylation.

Journal of biological chemistry; 01/01/2010
(AN IND44303332)
Agricola

Functional Characterization of the Kinase Activation Loop in Nucleophosmin (NPM)-Anaplastic Lymphoma Kinase (ALK) Using Tandem Affinity Purification and Liquid Chromatography-Mass Spectrometry.

Wang, Peng; Lai, Raymond; Young, Leah C.; Li, Liang; Wu, Fang; Ma, Yupo

Journal of biological chemistry; 01/01/2010
(AN IND44303333)
Agricola

Using Site-directed Mutagenesis to Study Carboxypeptidase A: the Work of William J. Rutter.

Kresge, Nicole; Hill, Robert L.; Simoni, Robert D.

Journal of biological chemistry; 01/01/2010
(AN IND44303334)
Agricola

Proteomic Analysis of GLUT4 Storage Vesicles Reveals LRP1 to Be an Important Vesicle Component and Target of Insulin Signaling.

Journal of biological chemistry; 01/01/2010
(AN IND44303256)
Agricola

AMPK Îø1 Deletion Reduces Appetite, Preventing Obesity and Hepatic Insulin Resistance.

Journal of biological chemistry; 01/01/2010
(AN IND44303257)
Agricola

Determination of the Dissociation Constants for Ca℗øâð and Calmodulin from the Plasma Membrane Ca℗øâð Pump by a Lipid Probe That Senses Membrane Domain Changes.

Journal of biological chemistry; 01/01/2010
(AN IND44303258)
Agricola

Îł5Îø1 Integrin Engagement Increases Large Conductance, Ca℗øâð-activated Kâð Channel Current and Ca℗øâð Sensitivity through c-src-mediated Channel Phosphorylation.

Journal of biological chemistry; 01/01/2010
(AN IND44303260)
Agricola

Pyrroloquinoline Quinone Stimulates Mitochondrial Biogenesis through cAMP Response Element-binding Protein Phosphorylation and Increased PGC-1Îł Expression.

Journal of biological chemistry; 01/01/2010
(AN IND44303261)
Agricola

Antioxidant-induced Phosphorylation of Tyrosine 486 Leads to Rapid Nuclear Export of Bach1 That Allows Nrf2 to Bind to the Antioxidant Response Element and Activate Defensive Gene Expression.

Kaspar, James W.; Jaiswal, Anil K.

Journal of biological chemistry; 01/01/2010
(AN IND44303262)
Agricola

Recognition of Adenosine Residues by the Active Site of Poly(A)-specific Ribonuclease.

Henriksson, Niklas; Song, Haiwei; Virtanen, Anders; Nilsson, Per; Wu, Mousheng

Journal of biological chemistry; 01/01/2010
(AN IND44303263)
Agricola

Functional Analysis of the Kv1.1 N255D Mutation Associated with Autosomal Dominant Hypomagnesemia.

Journal of biological chemistry; 01/01/2010
(AN IND44303264)
Agricola

Direct Evidence for Nitrogen Ligation to the High Stability Semiquinone Intermediate in Escherichia coli Nitrate Reductase A.

Journal of biological chemistry; 01/01/2010
(AN IND44303265)
Agricola

RNA Polymerase II C-terminal Heptarepeat Domain Ser-7 Phosphorylation Is Established in a Mediator-dependent Fashion.

Journal of biological chemistry; 01/01/2010
(AN IND44303267)
Agricola

Cell-surface Processing of the Metalloprotease Pro-ADAMTS9 Is Influenced by the Chaperone GRP94/gp96.

Koo, Bon-Hun; Apte, Suneel S.

Journal of biological chemistry; 01/01/2010
(AN IND44303268)
Agricola

Regulation of Phagocytosis in Macrophages by Neuraminidase 1.

Journal of biological chemistry; 01/01/2010
(AN IND44303269)
Agricola

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